xsh_mbias7

Usage

Overview

This recipe creates a master bias frame by computing the median of all input bias frames.

Input Frames :
- A set of n RAW frames (Format=RAW, n >=3, Tag = BIAS_arm)
- [OPTIONAL] A map of non linear bad pixels (Format=QUP, Tag = BP_MAP_NL_arm)
- [OPTIONAL] A map of reference bad pixels (Format = QUP,RAW, Tag = BP_MAP_RP_arm) Products :
- A master bias frame (Format=PRE, PRO.CATG = MASTER_BIAS_arm)

Options

--keep-temp <str>

If ´no´, temporary files are deleted. (str; default: ´no´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.keep-temp [default = no].

--debug-level <str>

Additional xshooter debug level. One of ´none´, ´low´, ´medium´, ´high´ (str; default: ´none´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.debug-level [default = none].

--time-stamp <bool>

Add timestamp to product file name. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.time-stamp [default = False].

--decode-bp <int>

Integer representation of the bits to be considered bad when decoding the bad pixel mask pixel values. Most frequent codes relevant for the user: 0: good pixel, 8: pick-up noise, 16: cosmic-ray removed, 32: cosmic-ray unremoved, 128: calibration file defect, 256: hot pixel, 512: dark pixel, 4096: A/D converted saturation, 32768: non linear pixel, 1048576: extrapolated flux in NIR, 4194304: Interpolated flux during extraction. (int; default: 2144337919). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.decode-bp [default = 2144337919].

--stack-method <str>

Method used to build master frame. (str; default: ´median´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.stack-method [default = median].

--klow <float>

Kappa used to clip low level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.klow [default = 5.0].

--khigh <float>

Kappa used to clip high level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.khigh [default = 5.0].

--fpn_llx <int>

Lower left reference area X coordinate for Fixed Pattern Noise computation (int; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_llx [default = 10].

--fpn_lly <int>

Lower left reference area Y coordinate for Fixed Pattern Noise computation (int; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_lly [default = 10].

--fpn_urx <int>

Upper right reference area X coordinate for Fixed Pattern Noise computation (int; default: 1024). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_urx [default = 1024].

--fpn_ury <int>

Upper right reference area Y coordinate for Fixed Pattern Noise computation (int; default: 1024). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_ury [default = 1024].

--fpn_hsize <int>

Sample size for Fixed Pattern Noise computation (int; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_hsize [default = 10].

--fpn_nsamples <int>

Number of sampling points for Fixed Pattern Noise computation (int; default: 100). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.fpn_nsamples [default = 100].

--ron_method <str>

RON computation method (str; default: ´ALL´). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ron_method [default = ALL].

--random_sizex <int>

Region X size for random computation (int; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.random_sizex [default = 10].

--random_nsamples <int>

Number of random samples (int; default: 100). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.random_nsamples [default = 100].

--ref1_llx <int>

Lower left X of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_llx [default = -1].

--ref1_lly <int>

Lower left Y of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_lly [default = -1].

--ref1_urx <int>

Upper right X of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_urx [default = -1].

--ref1_ury <int>

Upper right Y of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref1_ury [default = -1].

--ref2_llx <int>

Lower left X of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_llx [default = -1].

--ref2_lly <int>

Lower left Y of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_lly [default = -1].

--ref2_urx <int>

Upper right X of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_urx [default = -1].

--ref2_ury <int>

Upper right Y of reference region (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.ref2_ury [default = -1].

--stacking_ks_low <int>

Lower value of kappa-sigma clip in stacking (int; default: 3). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.stacking_ks_low [default = 3].

--stacking_ks_iter <int>

Number of iterations in kappa-sigma clip in stacking (int; default: 25). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.stacking_ks_iter [default = 25].

--struct_refx <int>

Reference X value to compute structure (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.struct_refx [default = -1].

--struct_refy <int>

Reference Y value to compute structure (int; default: -1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.struct_refy [default = -1].

--pd_noise_compute <bool>

Determine Fixed Pattern Noise. If TRUE the Fixed Pattern Noise power spectrum is determined. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.pd_noise_compute [default = False].

--pd_noise_dc_x <int>

x-size (pixel) of the mask starting at (x,y) = (1,1). (int; default: 1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.pd_noise_dc_x [default = 1].

--pd_noise_dc_y <int>

y-size (pixel) of the mask starting at (x,y) = (1,1). (int; default: 1). The full name of this option for the EsoRex configuration file is xsh.xsh_mbias.pd_noise_dc_y [default = 1].

Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.

Version

xsh_mbias 3.5.0