wordmatch1e
Finds regions of identity (exact matches) of two sequences
Usage
wordmatch -asequence
seqset
-bsequence
seqall
-wordsize
integer
[-dumpalign
toggle]
-outfile
align
[-logfile
outfile]
[-dumpfeat
toggle]
-aoutfeat
featout
-boutfeat
featout
wordmatch -help
Overview
wordmatch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Local" command group(s).
Options
Input section
-
-asequence seqset
-
-bsequence seqall
Required section
-
-wordsize integer -
Default value: 4
Output section
-
-dumpalign toggle -
Default value: Y
-
-outfile align
-
-logfile outfile -
Statistics on distribution of kmers and matches Default value: wordmatch.log
-
-dumpfeat toggle -
Default value: Y
-
-aoutfeat featout
-
-boutfeat featout
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.
-dumpalign since Debian 7 (Wheezy);
-dumpfeat since Debian 7 (Wheezy);
-logfile since Debian 7 (Wheezy).