velvetg(1) on Linux
The text 3f33b8bb4268, as Debian 7 (Wheezy) shipped it.
de Bruijn graph construction, error removal and repeat resolution
Flags it lists
-
-alignments -
-amos_file -
-clean -
-conserveLong -
-cov_cutoff -
-coverage_mask -
-exportFiltered -
-ins_length -
-ins_length2 -
-ins_length_long -
-long_mult_cutoff -
-max_branch_length -
-max_gap_count -
-min_contig_lgth -
-min_pair_count -
-paired_exp_fraction -
-read_trkg -
-scaffolding -
-unused_reads -
-very_clean