vcfsamplediff1

Usage

Overview

Establish putative somatic variants using reported differences between germline and somatic samples. Tags each record where the listed sample genotypes differ with . The first sample is assumed to be germline, the second somatic. Each record is tagged with ={germline,somatic,loh} to specify the type of variant given the genotype difference between the two samples.

Options

options:
    -s --strict     Require that no observations in the germline support the somatic alternate.
Type: transformation

Exit status

0

Success

not 0

Failure

Other