vcfflatten(1)

Usage

vcfflatten [options][file] -h –help display this help message and exit. -i –ignore-errors do not flatten locus if `AF' is not specified.

Overview

Removes multi-allelic sites by picking the most common alternate. Requires allele frequency specification `AF' and use of `G' and `A' to specify the fields which vary according to the Allele or Genotype. VCF file may be specified on the command line or piped as stdin.

Options

: Type: transformation

Exit status

0: Success

not 0: Failure

Other

Releases

3 releases since Debian 11 (Bullseye); the text changed 2 times.

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