vcfanno(1)

vcfanno1

Annotate a vcf with other vcfs/beds/tabixed files

Overview

============================================= vcfanno version 0.3.2 [built with go1.14.4]

see: https://github.com/brentp/vcfanno ============================================= Usage of vcfanno:

-base-path string

optional base-path to prepend to annotation files in the config

-ends

annotate the start and end as well as the interval itself.

-lua string

optional path to a file containing custom javascript functions to be used as ops

-p int

number of processes to use. (default 2)

-permissive-overlap

annotate with an overlapping variant even it doesn't share the same ref and alt alleles. Default is to require exact match between variants.

Releases

Unchanged in 3 releases since Debian 11 (Bullseye).

  1. 11–13

Author

This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.

From vcfanno 0.3.5+ds-2+b9 in Debian 13 (Trixie). Parsed by carta from the page's man source.