vcf-merge1
Merge the bgzipped and tabix indexed vcf files
Usage
merge-vcf [OPTIONS]
file1.vcf
file2.vcf.gz ...
>
out.vcf
Overview
About: Merge the bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
Options
-
-c, --chromosomes <list|file> -
Same as
-r, left for backward compatibility. Please do not use as it will be dropped in the future.
-
-d, --remove-duplicates -
If there should be two consecutive rows with the same chr:pos, print only the first one.
-
-H, --vcf-header <file> -
Use the VCF header
-
-h, -?, --help -
This help message.
-
-r, --regions <list|file> -
Do only the given regions (comma-separated list or one region per line in a file).
-
-s, --silent -
Try to be a bit more silent, no warnings about duplicate lines.
Releases
Unchanged in 7 releases since Debian 7 (Wheezy).