truspades1
Truspades genome assembler
Usage
truspades [options]
-o
<output_dir>
Overview
truspades is the main executable for the truSPAdes software. It assembles genomic reads given to it and places the resulting assembly in <output_dir>.
Options
Basic options
-
-o <output_dir> -
directory to store all the resulting files (required)
-
--test -
runs truSPAdes on toy dataset
-h/--help
prints this usage message
-t/--threads <int>
number of threads
-
--continue -
continue interrupted launch
-
--construct-dataset -
parse dataset from input folder
Input options
-
--input-dir <directory> -
directory with input data. Note that the directory should contain only files with reads. This option can be used several times to provide several input directories.
--dataset <file>:w: file with dataset description
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.