trna2sap1
Convert trnascan-se output to an asn.1 seq-annot object
Usage
trna2sap [-]
[-a]
[-c
str]
[-f
str]
[-i
filename]
[-j]
[-m
str]
[-n
str]
[-o
filename]
[-p
dir]
[-r
dir]
[-s]
[-t
str]
[-u]
[-x
str]
Overview
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.
Options
A summary of options is included below.
--
Print usage message
-
-a -
Add tRNAscan-SE citation
-
-c str -
Comment
-
-f str -
Substring Filter
-
-i filename -
Single Input file (standard input by default)
-
-j -
Just produce a five-column feature table, à la trna2tbl(1).
-
-m str -
ReMark
-
-n str -
Annotation Name (normally “tRNA”).
-
-o filename -
Single Output file (standard output by default)
-
-p dir -
Path to files
-
-r dir -
Path for Results
-
-s -
Ignore Pseudo tRNAs
-
-t str -
Annotation Title (normally “tRNAscan-SE”).
-
-u -
Ignore Undetermined tRNAs
-
-x str -
File selection suffix with
-p(.trnaby default).
Releases
10 releases since Debian 4.0 (Etch); the text changed 1 time.