trees-distances(1)

Usage

trees-distances analysis trees-file1 [trees-file2 ...]

Compute autocorrelations or other functions of tree distances.

`-h, –help`	produce help message
`-s arg (=0), –skip arg (=0)`	number of tree samples to skip
`-u arg, –until arg`	Read until this number of trees.
`-m arg, –max arg`	Thin tree samples down to this number of trees.
`-x arg (=1), –subsample arg (=1)`	factor by which to subsample
`-V, –verbose`	Output more log messages on stderr.

–analysis arg (=matrix): Analysis: matrix, autocorrelation, diameter, compare, closest, convergence, converged.

–metric arg (=topology): Tree distance: topology, branch, internal-branch.

–converged arg (=0.05): Comma-separated quantiles of distance required for converged? (smaller is more strict).

BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .

Please send bug reports to ⟨[email protected]⟩\c .

4 releases since Debian 10 (Buster); the text changed 2 times.