trees-bootstrap(1)

Usage

trees-bootstrap file1 [file2 ...] –predicates predicate file [OPTIONS]

Compare support for partitions between different files.

`-h, –help`	Produce help message.
`-s arg (=10%), –skip arg (=10%)`	Number of trees to skip.
`-u arg, –until arg`	Read until this number of trees.
`-m arg, –max arg`	Thin tree samples down to this number of trees.
`-x arg, –subsample arg`	Factor by which to sub-sample.
`–predicates arg`	Predicates to examine.
`–min-support arg (=0.1)`	Minimum value of predicates to consider interesting..
`-V, –verbose`	Output more log messages on stderr.

`–bootstrap`	Do block bootstrapping to get a CI on the posterior probabilities.
`–samples arg (=10000)`	Number of bootstrap samples.
`–pseudocount arg (=1)`	Extra 0/1 to add to bootstrap samples.
`–blocksize arg`	Block size to use in block boostrap.
`–seed arg`	Random seed.

`–separation arg (=0)`	Only report trees/partitions if they differ by this many LODs
`–confidence arg (=0.95)`	Width of confidence intervals
`–LOD-table arg`	Write the partitions LOD10’s to a file.

BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .

Please send bug reports to ⟨[email protected]⟩\c .

4 releases since Debian 10 (Buster); the text changed 2 times.