transformseq1
Convert multiple sequence alignments from one format to another
Usage
transformseq [options]
<
sequence_data.fa
>
sequence_logo.eps
Overview
-
A tool for converting multiple sequence alignments from one format to
another.
Options
-
--version -
show program's version number and exit
-
-h --help -
show this help message and exit
-
Input/Output Options:
-
-f --fin FILENAME -
Sequence input file (default: stdin)
-
--format-in FORMAT -
Multiple sequence alignment format: (clustal, fasta, plain, msf, genbank, nbrf, nexus, phylip, stockholm, intelligenetics, table, array)
-
-o --fout FILENAME -
Output file (default: stdout)
-
-F --format-out FORMAT -
Multiple sequence alignment output format: (clustal, fasta, plain, intelligenetics, table, array) (Default: fasta)
-
Transformations:
-
--seg -
Mask low complexity regions in protein sequences.
-
--subsample FRACTION -
Return a random subsample of the sequences.
-
--reverse -
reverse sequences
-
--complement -
complement DNA sequences
Releases
2 releases since Debian 12 (Bookworm); the text changed 1 time.