tombo1
Identification of modified nucleotides from raw nanopore sequencing data
Usage
tombo [-h]
[-v]
resquiggle,preprocess,filter,detect_modifications,text_output,build_model,plot ...
Overview
Tombo is a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data.
Tombo also provides tools for the analysis and visualization of raw nanopore signal.
Tombo command groups (additional help available within each command group):
resquiggle
|
Re-annotate raw signal with genomic alignment from existing basecalls. |
|---|---|
preprocess
|
Pre-process nanopore reads for Tombo processing. |
filter
|
Apply filter to Tombo index file for specified criterion. |
detect_modifications
|
Perform statistical testing to detect non-standard nucleotides. |
text_output
|
Output Tombo results in text files. |
build_model
|
Create canonical and alternative base Tombo models. |
plot
|
Save plots to visualize raw nanopore signal or testing results. |
optional arguments:
|
show this help message and exit |
|---|---|
|
show Tombo version and exit. |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).