---
name: "toAfg"
section: "1"
platform: "linux"
package: "blasr"
version: "5.3+0-1"
release: "Debian 9 (Stretch)"
platforms: ["linux"]
url: "https://carta.tech/man/toAfg"
---

# toAfg(1)

Print reads stored in a file (pls\|fasta\|fastq) as an afg.

## NAME

toAfg - Print reads stored in a file (pls\|fasta\|fastq) as an afg.

## SYNOPSIS

**toAfg** *input.filetype  output.filetype* \[**-minSubreadLength** *l*\] \[**-regionTable** *regions\_file*\] \[**-noSplitSubreads**\] \[**-useccsdenovo**\] \[**-uniformQV** *QV*\]

## SEE ALSO

[**blasr**(1)](/man/blasr/1.md) [**loadPulses**(1)](/man/loadPulses/1.md) [**pls2fasta**(1)](/man/pls2fasta/1.md) [**samFilter**(1)](/man/samFilter/1.md) [**samtoh5**(1)](/man/samtoh5/1.md) [**samtom4**(1)](/man/samtom4/1.md) [**sawriter**(1)](/man/sawriter/1.md) [**sdpMatcher**(1)](/man/sdpMatcher/1.md)