tff_visualize_overlap.py1
Display a tractogram and its density map
Overview
usage: tff_visualize_overlap.py [-h] [--remove_invalid]
-
IN_TRACTOGRAM reference
Display a tractogram and its density map (computed from Dipy) in rasmm, voxmm and vox space with its bounding box.
positional arguments:
IN_TRACTOGRAM
|
Tractogram filename. Format must be one of trk, tck, vtk, fib, dpy, trx. |
|---|---|
reference
|
Reference anatomy for tck/vtk/fib/dpy file support (nii or nii.gz). |
options:
-
-h, --help -
show this help message and exit
-
--remove_invalid -
Removes invalid streamlines to avoid the density_mapfunction to crash.