tff_convert_tractogram.py1

Convert tractograms files to updated file format

Overview

usage: tff_convert_tractogram.py [-h] [--reference REFERENCE]

[--positions_dtype {float16,float32,float64}]: [--offsets_dtype {uint32,uint64}] [-f] IN_TRACTOGRAM OUT_TRACTOGRAM

Conversion of '.tck', '.trk', '.fib', '.vtk', '.trx' and 'dpy' files using updated file format standard. TCK file always needs a reference file, a NIFTI, for conversion. The FIB file format is in fact a VTK, MITK Diffusion supports it.

positional arguments:

`IN_TRACTOGRAM`	Tractogram filename. Format must be one of trk, tck, vtk, fib, dpy, trx.
`OUT_TRACTOGRAM`	Output filename. Format must be one of trk, tck, vtk, fib, dpy, trx.

options:

-h, --help: show this help message and exit

--reference REFERENCE: Reference anatomy for tck/vtk/fib/dpy file support (.nii or .nii.gz).

-f: Force overwriting of the output files.

Data type options:

--positions_dtype {float16,float32,float64}: Specify the datatype for positions for trx. [float32]

--offsets_dtype {uint32,uint64}: Specify the datatype for offsets for trx. [uint64]