textsearch(1e)

Usage

textsearch -sequence seqall -pattern string [-casesensitive boolean] [-html boolean] -only boolean -heading boolean -usa boolean -accession boolean -name boolean -description boolean -outfile outfile

textsearch -help

Overview

textsearch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data retrieval:Text data" command group(s).

Options

Input section

-sequence seqall

Required section

-pattern string: The search pattern is a regular expression. Use a | to indicate OR. For example: human|mouse will find text with either 'human' OR 'mouse' in the text

Additional section

-casesensitive boolean: Default value: N

Output section

-html boolean: Default value: N

-only boolean: This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -nousa -noacc -nodesc' to get only the name output, you can specify '-only -name' Default value: N

-heading boolean: Default value: @(!$(only))

-usa boolean: Default value: @(!$(only))

-accession boolean: Default value: @(!$(only))

-name boolean: Default value: @(!$(only))

-description boolean: Default value: @(!$(only))

-outfile outfile

Releases

9 releases since Debian 5.0 (Lenny); the text changed 2 times.