syco1e

Draw synonymous codon usage statistic plot for a nucleotide sequence

Usage

syco -sequence sequence -cfile codon -window integer -uncommon boolean -minimum float -plot toggle -graph xygraph -outfile outfile

syco -help

Overview

syco is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Codon usage,Nucleic:Gene finding" command group(s).

Options

Input section

-sequence sequence

-cfile codon: Codon usage file

Advanced section

-window integer: Default value: 30

-uncommon boolean: Default value: N

-minimum float: Default value: .15

Output section

-plot toggle: Default value: Y

-graph xygraph

-outfile outfile

Releases

9 releases since Debian 5.0 (Lenny); the text changed 2 times.

5.0
6.0
7–13