surankco-training1
Training of random forest using contig features and contig scores
Usage
surankco-training [options]
Overview
Training of random forest using contig features from surankco-feature(1) and contig scores from surankco-score(1).
Options
-f FEATURES, --features=FEATURES
-
Indicate a list of surankco feature files (comma separated), correct suffixes are mandatory ("*.features.txt")
-d DIRECTORY, --directory=DIRECTORY
-
Indicate a directory containing surankco feature files ("*.features.txt")
-o OUTPUT.FILENAME, --output.filename=OUTPUT.FILENAME
-
Indicate a name for the export of the random forest classifiers (default = "surankco_rfs.RData")
-e EXPONENTIAL.QUANTILE, --exponential.quantile=EXPONENTIAL.QUANTILE
-
Indicate an exponential distribution quantile to divide scores (default: 0.25)
-m MANUAL.THRESHOLDS, --manual.thresholds=MANUAL.THRESHOLDS
-
Indicate manual thresholds instead of quantiles, one per score each (comma separated) in the same order as in the score file
-h, --help
-
Show this help message and exit
Releases
Unchanged in 5 releases since Debian 9 (Stretch).