stretcher1e
Needleman-wunsch rapid global alignment of two sequences
Usage
stretcher -asequence
sequence
-bsequence
sequence
[-datafile
matrix]
[-gapopen
integer]
[-gapextend
integer]
-outfile
align
stretcher -help
Overview
stretcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Global" command group(s).
Options
Input section
-
-asequence sequence
-
-bsequence sequence
-
-datafile matrix -
This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation.
Additional section
-
-gapopen integer -
Default value: @($(acdprotein)? 12 : 16)
-
-gapextend integer -
Default value: @($(acdprotein)? 2 : 4)
Output section
-
-outfile align
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.