strainphlan(1) on Linux
The text b63c84383a36, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye), Debian 10 (Buster), Debian 9 (Stretch) shipped it. The page shows this text now.
METAgenomic PHyLogenetic ANalysis for metagenomic taxonomic profiling (strainer)
Flags it lists
-
--N_col -
--N_count -
--N_in_marker -
--alignment_program -
--bootstrap_raxml -
--gap_in_internal_col -
--gap_in_sample -
--gap_in_trailing_col -
--gap_trailing_col_limit -
--help -
--ifn_markers -
--keep_alignment_files -
--keep_full_alignment_files -
--long_gap_length -
--long_gap_percentage -
--marker_in_clade -
--marker_list_fn -
--marker_strip_length -
--mpa_pkl -
--nprocs_align_clean -
--nprocs_load_samples -
--nprocs_main -
--nprocs_raxml -
--output_dir -
--p_value -
--print_clades_only -
--relaxed_parameters -
--relaxed_parameters2 -
--sample_in_clade -
--sample_in_marker -
--save_sample2fullfreq -
--use_threads -
-h