srst2(1) on Linux
The text c398f6b3b129, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye), Debian 10 (Buster), Debian 9 (Stretch) shipped it. The page shows this text now.
Short Read Sequence Typer
Flags it lists
-
--baseq -
--forward -
--gene_max_mismatch -
--help -
--keep_interim_alignment -
--log -
--mapq -
--max_divergence -
--merge_paired -
--min_coverage -
--min_depth -
--min_edge_depth -
--mlst_db -
--mlst_definitions -
--mlst_delimiter -
--mlst_max_mismatch -
--no_gene_details -
--other -
--output -
--prob_err -
--read_type -
--report_all_consensus -
--report_new_consensus -
--reverse -
--samtools_args -
--save_scores -
--stop_after -
--use_existing_pileup -
--use_existing_scores -
--version -
-h