splazers(1) on Linux
The text 515074df2986, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye), Debian 10 (Buster) shipped it. The page shows this text now.
Split-map read sequences
Flags it lists
-
--alignment -
--anchored -
--distance-range -
--error-distr -
--errors-prefix -
--errors-suffix -
--forward -
--genome-len -
--genome-naming -
--help -
--indels -
--library-error -
--library-length -
--low-memory -
--match-N -
--max-gap -
--max-hits -
--min-clipped-len -
--min-gap -
--output -
--output-format -
--outputUnmapped -
--overabundance-cut -
--param-dir -
--penalty-c -
--percent-identity -
--position-format -
--purge-ambiguous -
--quality-in-header -
--read-naming -
--recognition-rate -
--repeat-length -
--reverse -
--sort-order -
--split-mapping -
--taboo-length -
--trim-reads -
--unique -
--verbose -
--version -
--vverbose -
-a -
-an -
-dr -
-ed -
-ep -
-es -
-f -
-gl -
-gn -
-h -
-i -
-id -
-le -
-ll -
-lm -
-m -
-mN -
-maxG -
-mcl -
-minG -
-o -
-oc -
-of -
-ou -
-pa -
-pc -
-pd -
-pf -
-qih -
-r -
-rl -
-rn -
-rr -
-sm -
-so -
-tl -
-tr -
-v -
-vv