snp_store(1) on Linux
The text 7b075d079eca, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye), Debian 10 (Buster) shipped it. The page shows this text now.
SnpStore
Flags it lists
-
--amp-cycles -
--amp-efficiency -
--both-strands-indel -
--corrected-het -
--diff-pos -
--dont-clip -
--exclude-border -
--exclude-border-indel -
--force-call -
--help -
--hetero-rate -
--hide-qualities -
--indel-file -
--indel-perc-threshold -
--indel-quality-thresh -
--indel-threshold -
--initial-N -
--log-file -
--max-pile -
--max-polymer-run -
--mean-alleleFreq -
--merged-max-pile -
--method -
--min-coverage -
--min-explained-column -
--min-map-quality -
--min-mutations -
--min-quality -
--multi -
--only-successful-candidates -
--orientation-aware -
--output -
--parse-window-size -
--perc-threshold -
--quiet -
--realign -
--solexa-qual-offset -
--suboptimal -
--theta -
--verbose -
--version -
--very-verbose -
-ac -
-ae -
-bsi -
-ch -
-dc -
-dp -
-eb -
-ebi -
-fc -
-h -
-hq -
-hr -
-id -
-in -
-ipt -
-iqt -
-it -
-lf -
-m -
-maf -
-mc -
-mec -
-mm -
-mmp -
-mmq -
-mp -
-mpr -
-mq -
-mu -
-o -
-oa -
-osc -
-pt -
-pws -
-q -
-re -
-sqo -
-su -
-th -
-v -
-vv