snp_store(1) on Linux
The text 5ff3f9b33753, as Debian 8 (Jessie) shipped it.
SnpStore SYNOPSIS DESCRIPTION -h, --help --version -o, --output FILE -if, --input-format NUM -of, --output-format NUM -dc, --dont-clip -mu, --multi -hq, --hide-qualities -sqo, --solexa-qual-offset -id, --indel-file FILE -m, --method NUM -mp, --max-pile NUM -mmp, --merged-max-pile -mc, --min-coverage NUM -fc, --force-call NUM -oa, --orientation-aware -mpr, --max-polymer-run NUM -dp, --diff-pos NUM -eb, --exclude-border NUM -su, --suboptimal -re, --realign -pws, --parse-window-size NUM -mm, --min-mutations NUM -pt, --perc-threshold NUM -mq, --min-quality NUM -th, --theta NUM -hr, --hetero-rate NUM -mmq, --min-map-quality NUM -ch, --corrected-het -maf, --mean-alleleFreq NUM -ac, --amp-cycles NUM -ae, --amp-efficiency NUM -in, --initial-N NUM -mec, --min-explained-column NUM -it, --indel-threshold NUM -ipt, --indel-perc-threshold NUM -iqt, --indel-quality-thresh NUM -bsi, --both-strands-indel -ebi, --exclude-border-indel NUM -lf, --log-file FILE -v, --verbose -vv, --very-verbose -q, --quiet VERSION