snp_store(1) on Linux
The text 1a99f4fd4b1c, as Debian 9 (Stretch) shipped it.
SnpStore SYNOPSIS DESCRIPTION REQUIRED ARGUMENTS OPTIONS -h, --help --version-check BOOL --version -o, --output OUTPUT_FILE -osc, --only-successful-candidates -dc, --dont-clip -mu, --multi -hq, --hide-qualities -sqo, --solexa-qual-offset -id, --indel-file OUTPUT_FILE -m, --method STRING -mp, --max-pile INTEGER -mmp, --merged-max-pile -mc, --min-coverage INTEGER -fc, --force-call INTEGER -oa, --orientation-aware -mpr, --max-polymer-run INTEGER -dp, --diff-pos INTEGER -eb, --exclude-border INTEGER -su, --suboptimal -re, --realign -pws, --parse-window-size INTEGER -mm, --min-mutations INTEGER -pt, --perc-threshold DOUBLE -mq, --min-quality DOUBLE -th, --theta DOUBLE -hr, --hetero-rate DOUBLE -mmq, --min-map-quality INTEGER -ch, --corrected-het -maf, --mean-alleleFreq DOUBLE -ac, --amp-cycles INTEGER -ae, --amp-efficiency DOUBLE -in, --initial-N INTEGER -mec, --min-explained-column DOUBLE -it, --indel-threshold INTEGER -ipt, --indel-perc-threshold DOUBLE -iqt, --indel-quality-thresh INTEGER -bsi, --both-strands-indel -ebi, --exclude-border-indel INTEGER -lf, --log-file STRING -v, --verbose -vv, --very-verbose -q, --quiet EXAMPLES VERSION