snap-aligner-paired(1) on Linux
The text 1413c3abc7ab, as Debian 10 (Buster) shipped it.
scalable nucleotide alignment program
Flags it lists
-
--b -
-= -
-D -
-F -
-G -
-H -
-I -
-M -
-P -
-R -
-S -
-b -
-d -
-f -
-fs -
-h -
-hp -
-ku -
-lp -
-ms -
-n -
-no -
-nt -
-nu -
-o -
-om -
-pc -
-pf -
-rg -
-s -
-sa -
-sc -
-sm -
-so -
-t -
-wbs -
-x -
-xf