simkaMinCore1
Comparative metagenomics method dedicated to ngs datasets
Usage
simkaMin [option]
Overview
[Distance computation options]
sketch
|
: transform datasets in small sketches of k-mers and their abundance |
|---|---|
distance
|
: compute Jaccard and Bray-Curtis distances between sketches |
[Distance matrix manipulation options]
- export
-
: export distance matrices stored in binary format
[Sketch options]
append
|
: merge multiple sketch files into a single one |
|---|---|
info
|
: list datasets contained in a sketch file |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).