sim2gff1
Converts sim file into gff formatted records
Usage
sim2gff [-frxyHh]
sim_file
>
gff_file
Overview
This manual page documents briefly the sim2gff command.
sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
Options
-
-h, --help -
Show summary of options.
-
-f -
Output is written to a file named <sim_file>.gff.
-
-r -
Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).
-
-x <name> -
Specify the species name for species1 (default: "Seq1").
-
-y <name> -
Specify the species name for species2 (default: "Seq2").
-
-H -
Use the fasta file headers for species labels.
Exit status
The following perl-like exit status are returned:
0 Error
1 Successful completion
Releases
Unchanged in 11 releases since Debian 3.1 (Sarge).