showdb1e
Displays information on configured databases
Usage
showdb [-database
string]
[-html
boolean]
[-protein
boolean]
[-nucleic
boolean]
[-sequence
boolean]
[-feature
boolean]
[-text
boolean]
[-taxonomy
boolean]
[-resource
boolean]
[-assembly
boolean]
[-obo
boolean]
[-full
boolean]
[-methods
boolean]
[-fields
boolean]
[-defined
boolean]
[-release
boolean]
-only
toggle
-heading
boolean
-type
boolean
-id
boolean
-query
boolean
-all
boolean
-comment
boolean
[-outfile
outfile]
showdb -help
Overview
showdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data resources" command group(s).
Options
Input section
-
-database string
Additional section
-
-html boolean -
Default value: N
-
-protein boolean -
Default value: Y
-
-nucleic boolean -
Default value: Y
-
-sequence boolean -
Default value: Y
-
-feature boolean -
Default value: Y
-
-text boolean -
Default value: Y
-
-taxonomy boolean -
Default value: Y
-
-resource boolean -
Default value: Y
-
-assembly boolean -
Default value: Y
-
-obo boolean -
Default value: Y
-
-full boolean -
Default value: N
-
-methods boolean -
This displays the access methods that can be used on this database, for all, query or ID access Default value: $(full)
-
-fields boolean -
This displays the search fields that can be used on this database, other than the standard 'id' or 'acc' fields. Default value: $(full)
-
-defined boolean -
This displays a short name for the file containing the database definition Default value: $(full)
-
-release boolean -
Default value: $(full)
Advanced section
-
-only toggle -
This is a way of shortening the command line if you only want a few standard columns to be displayed. Instead of specifying: '-nohead -notype -noid -noquery -noall' to get only the comment output, you can specify '-only -comment' Default value: N
-
-heading boolean -
Default value: @(!$(only))
-
-type boolean -
Default value: @(!$(only))
-
-id boolean -
Default value: @(!$(only))
-
-query boolean -
Default value: @(!$(only))
-
-all boolean -
Default value: @(!$(only))
-
-comment boolean -
Default value: @(!$(only))
Output section
-
-outfile outfile -
Default value: stdout
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.
-assembly since Debian 7 (Wheezy);
-feature since Debian 7 (Wheezy);
-obo since Debian 7 (Wheezy);
-resource since Debian 7 (Wheezy);
-sequence since Debian 7 (Wheezy);
-taxonomy since Debian 7 (Wheezy);
-text since Debian 7 (Wheezy).