sand_uncompress_reads1
Uncompress sequence data
Usage
FCsand_uncompress_reads [-qvh]
[infile]
[outfile]
FT
Overview
sand_uncompress_reads reads sequence data in compressed FASTA format (cfa) used by sand_filter_master(1) and sand_align_master(1). and produces output in the standard FASTA format.
If the output file is omitted, standard output is used. if the input file is omitted, standard input is used. After completing the compression, this program will output a summary line of sequences and bytes compressed.
Options
-
-q -
Quiet mode: suppress summary line.
-
-h -
Display version information.
-
-v -
Show help text.
Exit status
On success, returns zero. On failure, returns non-zero.
Examples
To uncompress FCmydata.cfaFT into FCmydata.fastaFT:
-
% sand_uncompress_reads mydata.cfa mydata.fa
Releases
6 releases since Debian 7 (Wheezy); the text changed 4 times.
-h since Debian 10 (Buster);
-q since Debian 10 (Buster);
-v since Debian 10 (Buster).