samtools(1) on Linux
The text 6b3fbbb7050d, as Debian 6.0 (Squeeze) shipped it.
Utilities for the Sequence Alignment/Map (SAM) format
Flags it lists
-
-F -
-H -
-I -
-M -
-N -
-R -
-S -
-T -
-b -
-c -
-d -
-e -
-f -
-g -
-h -
-i -
-l -
-m -
-n -
-o -
-q -
-r -
-s -
-t -
-u