samtools-markdup(1) on Linux
The text 36334e1c52a9, as Debian 12 (Bookworm) shipped it.
mark duplicate alignments in a coordinate sorted file
Flags it lists
-
--barcode-name -
--barcode-rgx -
--barcode-tag -
--coords-order -
--include-fails -
--mode -
--no-PG -
--no-multi-dup -
--read-coords -
--threads -
-@ -
-S -
-T -
-c -
-d -
-f -
-l -
-m -
-r -
-s -
-t -
-u