samtools-ampliconstats(1) on Linux
The text 925ee58a044d, as Debian 12 (Bookworm) shipped it.
produces statistics from amplicon sequencing alignment file
Flags it lists
-
--depth-bin -
--filter-flag -
--max-amplicon-length -
--max-amplicons -
--min-depth -
--pos-margin -
--required-flag -
--single-ref -
--tcoord-bin -
--tcoord-min-count -
--tlen-adjust -
--use-sample-name -
-@ -
-D -
-F -
-S -
-a -
-b -
-c -
-d -
-f -
-l -
-m -
-o -
-s -
-t