samtools-ampliconclip(1) on Linux
The text 040981ee5bdb, as Debian 13 (Trixie) shipped it. The page shows this text now.
clip reads using a BED file
Flags it lists
-
--both-ends -
--clipped -
--fail -
--fail-len -
--filter-len -
--hard-clip -
--keep-tag -
--no-PG -
--no-excluded -
--original -
--primer-counts -
--rejects-file -
--soft-clip -
--strand -
--tolerance -
--unmap-len -
-b -
-f -
-o -
-u