saint-spc-noctrl1
Run saint scoring algorithm for protein-protein interaction data using label free quantitative proteomics data
Usage
saint-spc-noctrl [interactionFile]
[preyFile]
[baitFile]
[nburnin]
[niter]
[fthres]
[fgroup]
[var]
[normalize]
Overview
-burnin and iter: burn-in period and main iteration of MCMC
-fthres: frequency threshold above which probability is set to 0
-fgroup: frequency boundary dividing high and low frequency groups
-var: binary [0/1] indicator for modeling variance of the count data distributions
-normalize: whether to normalize the counts by total spectral counts
Releases
Unchanged in 7 releases since Debian 7 (Wheezy).