rsem-gff3-to-gtf1
Convert gff3 files to gtf files.
Overview
usage: rsem-gff3-to-gtf [-h] [--make-genes-as-transcripts]
- [--RNA-patterns <patterns>]
-
[--extract-sequences <output.fa>] input_GFF3_file output_GTF_file
Convert GFF3 files to GTF files.
positional arguments:
input_GFF3_file
|
Input GFF3 file. |
|---|---|
output_GTF_file
|
Output GTF file. |
options:
-
-h, --help -
show this help message and exit
-
--make-genes-as-transcripts -
GFF3 file does not contain transcripts, make each gene as a transcript. (default: False)
-
--RNA-patterns <patterns> -
Types of RNAs to be extracted, e.g. mRNA,rRNA (default: None)
-
--extract-sequences <output.fa> -
If GFF3 file contains reference sequences, extract them to the specified file (default: None)
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.
--make-genes-as-transcripts since Debian 10 (Buster).