rnr-tii1
Computes the taxonomic instability index
Overview
This is RnR-tii version 1.0 released by Andre J. Aberer in 2011-10-25.
This program computes the taxonomic instability index.
SYNTAX: rnr-tii -i <bootTrees> -n <runId> [-w <workingDir>] [-h] [-x <excludeFile>]
OBLIGATORY: -i <bootTrees>
-
A collection of bootstrap trees.
-n <runId>
-
An identifier for this run.
OPTIONAL -z <z>
-
The exponent used in the TII formula. Use small values to emphasize close relationships and vice versa. DEFAULT: 2
-w <workDir>
-
A working directory where output files are created.
-x <excludeFile>
-
Exclude the taxa in this file (one taxon per line) prior to computing the TII.
-h
-
This help file.
Releases
4 releases since Debian 10 (Buster); the text changed 1 time.
-h until Debian 11 (Bullseye);
-i until Debian 11 (Bullseye);
-n until Debian 11 (Bullseye);
-w until Debian 11 (Bullseye);
-x until Debian 11 (Bullseye);
-z until Debian 11 (Bullseye).