rnr-mast1

Overview

This is RnR-mast version 1.0 released by Andre J. Aberer in 2011-10-25.

This program computes maximum agreement trees for unrooted input sets.

SYNTAX: rnr-mast -i <bootTrees> -n <runId> [-w <workingDir>] [-h] [-a] [-x <excludeFile>]

OBLIGATORY: -i <bootTrees>

A collection of bootstrap trees.

-n <runId>

An identifier for this run.

OPTIONAL -a

Compute all possible MAST trees. Without this flag, you will

only get a few MASTs that are easy to compute. As there may be an exponential number of MASTs, use this option with care.

-w <workDir>

A working directory where output files are created.

-x <excludeFile>

Exclude the taxa in this file (one taxon per line)

prior to computing the MAST. If you compute all MASTs anyway, this option is option will not be useful. However, you can use this option to speed up things.

-h

This help file.