remove_short_seqs1

Visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

Overview

usage: remove_short_seqs [[-i input] [-l length] | [-h]] -i DIRECTORY the input directory of GenBank files with .gbk extensions -l INTEGER remove GenBank files that describe sequences shorter than this length

Usage:

: remove_short_seqs -i DIR -l INTEGER

Description:

: Removes GenBank files that are shorter than the specified length from the provided directory.

Required arguments:

-i, --input DIR

: Input directory of GenBank files with .gbk extensions.

-l, --length INTEGER

: Remove GenBank files that describe sequences shorter than this length.

Optional arguments:

-h, --help

: Show this message

Example:

: remove_short_seqs -i my_project/comparison_genomes -l 100000

Releases

Unchanged in 4 releases since Debian 10 (Buster).

10–13