razers(1) on Linux
The text 12d2de389db1, as Debian 7 (Wheezy), Debian 6.0 (Squeeze) shipped it.
Fast Read Mapping with Sensitivity Control
Flags it lists
-
--alignment -
--distance-range -
--error-distr -
--forward -
--genome-naming -
--help -
--indels -
--library-error -
--library-length -
--match-N -
--max-hits -
--output -
--output-format -
--overabundance-cut -
--param-dir -
--percent-identity -
--position-format -
--purge-ambiguous -
--read-naming -
--recognition-rate -
--repeat-length -
--reverse -
--shape -
--sort-order -
--taboo-length -
--threshold -
--trim-reads -
--unique -
--verbose -
--version -
--vverbose -
-V -
-a -
-dr -
-ed -
-f -
-gn -
-h -
-i -
-id -
-le -
-ll -
-m -
-mN -
-o -
-oc -
-of -
-pa -
-pd -
-pf -
-r -
-rl -
-rn -
-rr -
-s -
-so -
-t -
-tl -
-tr -
-v -
-vv