plotcon1e
Plot conservation of a sequence alignment
Usage
plotcon -sequences
seqset
[-scorefile
matrix]
-winsize
integer
-graph
xygraph
plotcon -help
Overview
plotcon is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Multiple" command group(s).
Options
Input section
-
-sequences seqset -
File containing a sequence alignment
-
-scorefile matrix -
This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation.
Required section
-
-winsize integer -
Number of columns to average alignment quality over. The larger this value is, the smoother the plot will be. Default value: 4
Output section
-
-graph xygraph
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.