picopore-rename1
Renaming groups and datasets within oxford nanopore technologies fast5 files
Usage
[-h] -p PATTERN -r REPLACEMENT [-v] [-y] [-t INT] [--prefix STR] [--skip-root] [--print-every INT] [input [input ...]]
Overview
A tool for renaming groups and datasets within Oxford Nanopore Technologies FAST5 files
Options
positional arguments:
- input
-
list of directories or fast5 files to shrink
optional arguments:
-
-h, --help -
show this help message and exit
-
-p PATTERN, --pattern PATTERN -
String or regex to replace
-
-r REPLACEMENT, --replacement REPLACEMENT -
String or regex replacement for PATTERN
-
-v, --version -
show version number and exit
-
-y -
skip confirm step
-
-t INT, --threads INT -
number of threads (Default: 1)
-
--prefix STR -
add prefix to output files to prevent overwrite
-
--skip-root, --no-skip-root -
ignore files in root input directories for albacore realtime compression (Default:
--no-skip-root)
-
--print-every INT -
print a dot every approximately INT files, or
-1to silence (Default: 100)
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).