pepwheel1e
Draw a helical wheel diagram for a protein sequence
Usage
pepwheel -sequence
sequence
-wheel
boolean
[-steps
integer]
[-turns
integer]
-graph
graph
-amphipathic
toggle
-squares
string
-diamonds
string
-octags
string
pepwheel -help
Overview
pepwheel is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Display,Protein:2D Structure" command group(s).
Options
Input section
-
-sequence sequence
Output section
-
-wheel boolean -
Default value: Y
-
-steps integer -
The number of residues plotted per turn is this value divided by the 'turns' value. Default value: 18
-
-turns integer -
The number of residues plotted per turn is the 'steps' value divided by this value. Default value: 5
-
-graph graph
Markup section
-
-amphipathic toggle -
If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified using the qualifiers '-squares', '-diamonds' and '-octags'.
-
-squares string -
By default the aliphatic residues ILVM are marked with squares. Default value: ILVM
-
-diamonds string -
By default the residues DENQST are marked with diamonds. Default value: DENQST
-
-octags string -
By default the positively charged residues HKR are marked with octagons. Default value: HKR
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.