pc-compare1
Program for scoring alignments according to a reference alignment with respect to sum-of-pairs and column scores.
Usage
pc-compare [TEST_ALIGNMENT]
[REFERENCE_ALIGNMENT]
[BALIBASE_ANNOT_FILE]
[-col]
[-core]
[-caps]
[-annot
FILENAME]
Note
pc-compare is named compare in the original sources, but has been remamed to avoid collision with other program names.
Reference
Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340.
Releases
10 releases since Debian 4.0 (Etch); the text changed 1 time.