pauvre1
Qc and genome browser plotting oxford nanopore and pacbio long reads
Overview
usage: pauvre [-h] [-v]
-
{browser,custommargin,marginplot,redwood,stats,synplot} ...
optional arguments:
-
-h, --help -
show this help message and exit
-
-v, --version -
Installed pauvre version
[sub-commands]:
|
{browser,custommargin,marginplot,redwood,stats,synplot} |
|
browser
|
an adaptable genome browser with various track types |
custommargin
|
plot custom marginal histograms of tab-delimited files |
marginplot
|
plot a marginal histogram of a fastq file |
redwood
|
make a redwood plot from a bam file |
stats
|
outputs stats from a fastq file |
synplot
|
make a synteny plot from a gff file, protein alignment, and partition file |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).