patmatmotifs1e
Scan a protein sequence with motifs from the prosite database
Usage
patmatmotifs -sequence
sequence
[-full
boolean]
[-prune
boolean]
-outfile
report
patmatmotifs -help
Overview
patmatmotifs is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).
Options
Input section
-
-sequence sequence
Additional section
-
-full boolean -
Default value: N
-
-prune boolean -
Ignore simple patterns. If this is true then these simple post-translational modification sites are not reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and tyr_phospho_site. Default value: Y
Output section
-
-outfile report
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.