patmatdb1e
Searches protein sequences with a sequence motif
Usage
patmatdb -sequence
seqall
-motif
string
-outfile
report
patmatdb -help
Overview
patmatdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).
Options
Input section
-
-sequence seqall
Required section
-
-motif string -
Patterns for patmatdb are based on the format of pattern used in the PROSITE database. For example: '[DE](2)HS{P}X(2)PX(2,4)C' means two Asps or Glus in any order followed by His, Ser, any residue other then Pro, then two of any residue followed by Pro followed by two to four of any residue followed by Cys. The search is case-independent, so 'AAA' matches 'aaa'.
Output section
-
-outfile report
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.