parsnp(1) on Linux
The text e554fd0c74ff, as Debian 13 (Trixie), Debian 12 (Bookworm) shipped it. The page shows this text now.
rapid core genome multi-alignment
Flags it lists
-
--DiagonalDiff -
--MUMi -
--alignment-program -
--alignmentprog -
--anchorlength -
--clusterD -
--curated -
--extend-lcbs -
--fastmum -
--gap-penalty -
--help -
--match-score -
--max-cluster-d -
--max-diagonal-difference -
--max-mash-dist -
--max-mumi-distance -
--max-mumi-distr-dist -
--max-partition-size -
--min-anchor-length -
--min-ani -
--min-cluster-size -
--minclustersize -
--mismatch-penalty -
--mum-length -
--mumi_only -
--mumlength -
--onlymumi -
--query -
--reference -
--skip-phylogeny -
--threads -
--unaligned -
--use-ani -
--use-fasttree -
--use-mash -
--validate-input -
--vcf -
--verbose -
--version -
-C -
-D -
-F -
-M -
-P -
-U -
-V -
-a -
-c -
-h -
-m -
-mmd -
-n -
-p -
-q -
-r -
-u -
-v -
-z