optimir1
Integrating genetic variations in mirna alignment
Usage
optimir [options]
Overview
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression. OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, and study the impact of genetic variations on polymiRs' expression.
Options
Basic options
-
-h, --help -
Produce help message
Subcommands
process-
Process a single fastq file with the OptimiR workflow
summarize-
Summarize results of previously processed samples
libprep-
Only prepare small RNA alignment library sequences that integrates genetic variants (required before processing multiple samples in parallel)
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).